Expression Atlas

This is a database for querying gene expression in T helper cells which accompanies the publication Stubbington MJT et al.. An Atlas of Mouse CD4+ T cell Transcriptomes. Biology Direct (2015) 10:14 .

The data was produced by, and this web service is developed by the Teichmann group at EMBL-EBI.

Raw data can be accessed at ArrayExpress accesssion E-MTAB-2582.

Searching

One can search for a gene of interest using either the name of a gene, or its ENSEMBL id (eg. ENSMUSG00000015619). It is also possible to provide a list of genes separated by a space.

Browsing

To look for genes which exhibit certain expression patterns, it is simple to just browse the databse.

Gene panel

For a gene of interest, information about that gene can be viewed in our gene panel. After searching for a gene, click its name to see expression values in cell types, as well as pairwise differential expression analysis for that gene in every pair of cell types.

Citation

Stubbington MJT et al.. An Atlas of Mouse CD4+ T cell Transcriptomes. Biology Direct (2015) 10:14.

Preview

Click the cell-type buttons above each column to filter genes based on their HE/INT/LE expression category.

Click the cell-type buttons above each column to filter genes based on their HE/INT/LE expression category.